Comments (4)
The requested URL /~cpanse/rawDiag_0.0.18.tar.gz was not found on this server.
from rawdiag.
tested for
sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS 10.13.6
locale:
[1] C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggplot2_2.2.1 base64enc_0.1-3 rmarkdown_1.9 tidyr_0.8.0 shiny_1.1.0 rawDiag_0.0.18
[7] protViz_0.3.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.16 lubridate_1.7.3 lattice_0.20-35 assertthat_0.2.0 rprojroot_1.3-2
[6] digest_0.6.15 psych_1.8.3.3 mime_0.5 R6_2.2.2 cellranger_1.1.0
[11] plyr_1.8.4 backports_1.1.2 RSQLite_2.1.0 evaluate_0.10.1 httr_1.3.1
[16] pillar_1.2.1 rlang_0.2.0 lazyeval_0.2.1 readxl_1.0.0 rstudioapi_0.7
[21] hexbin_1.27.1 blob_1.1.1 readr_1.1.1 stringr_1.3.0 foreign_0.8-69
[26] bit_1.1-12 munsell_0.4.3 broom_0.4.4 httpuv_1.4.5 modelr_0.1.1
[31] pkgconfig_2.0.1 mnormt_1.5-5 htmltools_0.3.6 tibble_1.4.2 codetools_0.2-15
[36] crayon_1.3.4 dplyr_0.7.4 later_0.7.5 grid_3.3.2 nlme_3.1-130
[41] jsonlite_1.5 xtable_1.8-2 gtable_0.2.0 DBI_0.8 magrittr_1.5
[46] scales_0.5.0 stringi_1.1.7 reshape2_1.4.3 promises_1.0.1 bindrcpp_0.2.2
[51] tidyverse_1.2.1 xml2_1.2.0 tools_3.3.2 forcats_0.3.0 bit64_0.9-7
[56] glue_1.2.0 purrr_0.2.4 hms_0.4.2 yaml_2.1.18 colorspace_1.3-2
[61] rvest_0.3.2 memoise_1.1.0 knitr_1.20 bindr_0.1.1 haven_1.1.1
works!
from rawdiag.
- download current rawDiag version
http://fgcz-ms.uzh.ch/~cpanse/rawDiag_0.0.18.tar.gz
- Set your Rprofile
the following snippet will configure the rawDiag shiny application that is searching into your download directory for raw files
cp@vpn-global-dhcp2-191:~ > cat .Rprofile
rawDiagfilesystemRoot <- Sys.getenv('HOME')
rawDiagfilesystemDataDir = c("Downloads",
"data",
"raw"
)
- check after restarting R
ls()
it should look like that:
- run the shiny application
library(shiny)
rawDiag_shiny <- system.file('shiny', 'bfabric_rawDiag', package = 'rawDiag')
shiny::runApp(rawDiag_shiny, display.mode = 'normal')
from rawdiag.
consider having a rawDiagrc
in $HOME
containing a list of directories;
has to be checked on the windows platform
from rawdiag.
Related Issues (20)
- plot.peaklist function does not allow to overwrite title and y- n xlabels
- R 4.0.2 - Error: `x` must be a vector, not a `data.frame/rawDiag` object. HOT 3
- Problems reading Meta Data from QExactive HF / HFX Instruments HOT 28
- Reading Analag Traces from RawFiles HOT 7
- Read additional Infos from Raw Files (Status Log, Tune Method) etc. HOT 10
- create unit test for `read.raw.info()`
- Cannot find dependency "Spectra" HOT 2
- .computeBestPeptideSpectrumMatch function HOT 11
- Installation of new RawFileReader files HOT 19
- Error in source(tfo) : negative length vectors are not allowed HOT 15
- replace `warning` with `message`
- Deprecation messages for read.XIC() and readScans() HOT 1
- `funs()` was deprecated in dplyr 0.8.0.
- Error in FUN(left, right) : non-numeric argument to binary operator in `PlotCycleTime` HOT 2
- issues with tempfile opening
- I am trying to run read.raw, but it returns an error HOT 1
- [Extra feature that would be nice] Using m/z / RT values for QCs rather peptides
- protViz 0.6.8 required prior to install rawDiag on R.4.0.5
- Package "mardown" and "plyr" have to be installed so the ShinyApp works
- Problems with the read.raw()
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from rawdiag.