Comments (4)
First try done!
https://github.com/fgcz/rawR/actions/runs/383025130
with limited success 😂! Looks like the package was installed from source (without the dlls and rawR.exe and having mono installed). Maybe we change the script so that the latest release is downloaded and installed, but then only the releases are checked. Still nice to have, since we could test release candidates before putting them into the wild.
Or we integrate scripts that download the missing components separately from our ftp server, create the executable (rawR.exe) and place them were they need to be.
Is it possible to install mono on the test system somehow?
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Or we finally add the RawFileReader dlls and the rawR.exe
to the repository and have these problems eliminated once and for all.
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The compomics ThermoRawFileParser repo also contains RawFileReader libraries in the repo.
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Related Issues (20)
- Get information on gradient HOT 1
- Enhancement - Complete readIndex() function HOT 9
- Peak charges for MS1 spectras HOT 4
- Spectrum scan centroid mZ, intensity and noises values do not match HOT 2
- Error in Example: Length of "x" and "y" are not matching HOT 3
- Read noise value for profile mode mass spectra HOT 4
- Read_Spectrum - Sum Spectra
- unit should be minute / auc computation in seconds HOT 24
- validate_rawrrSpectrum 'StartTime' HOT 4
- "Error: line 1 did not have 9 elements" for readIndex() and readChromatogram() + "Error : No scan vector is provided"for readSpectrum HOT 9
- Problem executing readChromatogram inside Singularity container HOT 5
- Add a check if `input` file exists and is not empty
- Error in if (rvs != "No RAW file specified!") { : the condition has length > 1 HOT 16
- Switch to RawFileReader 5.0.93 HOT 2
- different total number of Spectra in msconvert, compomics/ThermoRawFileParser and thermofisherlsms/RawFileReader HOT 2
- Request for auc.rawrrChromatogram HOT 3
- profile mode in readSpectrum HOT 11
- speed up readIndex/readSpectrum by base::textConnection HOT 14
- rawrr::buildRawrrExe() fails HOT 6
- auc.rawrrChromatogram question
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