Name: JJSzymanski
Type: User
Company: Network Analysis and Modelling, IPK Gatersleben
Bio: Researcher in Computational Systems Biology at the Leibniz Institute of Plant Genetics and Crop Plant Research - IPK Gatersleben
twitter: @JJSzymanski
Location: Gatersleben, Germany
Blog: https://www.ipk-gatersleben.de/en/molecular-genetics/network-analysis-and-modelling/
JJSzymanski's Projects
scripts for metabolomics analyses
CAusal Reasoning for Network Identification with integer VALue programming in R
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
csf fork of fastqc for usage on selected reads of unaligned bam file
Knowledgebase embedding with your company data
ODE model of the phosphoinositide pathway
This repository contains notebooks for an introduction into machine learning. Course contents will be updated overtime to keep code up to date with python and machine learning developments.
This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
OnPLS: Orthogonal Projections to Latent Structures in Multiblock and Path Model Data Analysis
A pipeline to generate a phylogenetic tree from huge SNP data
:exclamation: This is a read-only mirror of the CRAN R package repository. sybilSBML — SBML Integration in Package 'Sybil'
tools for working with genome variation graphs
Java library for computation of Voronoi Treemaps