Comments (4)
This is what works in my case, having Docker for Mac:
-
brew cask install xquartz
-
check
echo $DISPLAY
(if it's empty you can setexport DISPLAY=:0.0
) -
open -a XQuartz
-
ip=$(ifconfig en0 | grep inet | awk '$1=="inet" {print $2}')
-
xhost + $ip
-
docker run --rm -v /tmp/.X11-unix:/tmp/.X11-unix -e DISPLAY=$ip:0 fiji/fiji
you can read more here
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yes, can do it this later this week. I'm trying to actually install and use ClearVolume from the docker, let's see if it will work, so I can also include it in the README.
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@djarecka Sorry, the person who made this repository has left the project, and I have no time to support it or keep it up-to-date. When this repo was made, Docker for Mac did not exist yet, which is why it uses boot2docker
. That approach, AFAIK, is now deprecated in favor of Docker Machine.
I do think Docker is going to become increasingly prevalent, and I am very interested in seeing this project continue and grow. I am actually in the process of switching to Docker for some of my group's server infrastructure internally, so eventually (in months or years) I will likely revisit this and update it. In the meantime, if anyone else in the community has time and energy, it would be much appreciated!
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@djarecka Would you have time to submit a small PR to the README here, to include your directions above?
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Related Issues (19)
- Reuse base image for gui apps HOT 1
- Test on Windows HOT 3
- port7 option with fiji-linux64 HOT 3
- singularity? HOT 3
- bootstrap.js has moved HOT 2
- dockerfile/java missing from docker hub HOT 2
- Script does not run in headless mode HOT 1
- Docker build shows an error but passes
- Propose new image names
- install JavaFX
- add xvfb and/or x11 support HOT 1
- update containers with OCI labels HOT 1
- make base image configurable
- Migrate+update the documentation HOT 3
- fiji log goes to stderr HOT 1
- Error running update HOT 25
- Download specific version HOT 9
- Docker pulls badge does not link to DockerHub
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