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filmchen's Projects

clam icon clam

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

crane icon crane

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

dsb_model icon dsb_model

scripts and supplementary files for a study on modeling whole genome DSB profiles with chromatin features.

im4mec icon im4mec

Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images: a combined analysis of the PORTEC randomised trials and clinical cohorts'.

imc-if icon imc-if

Dual-modality imaging of immunofluorescence and imaging mass cytometry for high-resolution whole slide imaging with accurate single-cell segmentation

merci icon merci

MERCI for tracing of mitochondrion transfer between single cancer and T cells

preddsb icon preddsb

Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution

sevtras icon sevtras

sEV-containing droplet identification in scRNA-seq data (SEVtras)

unet icon unet

unet for image segmentation

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