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adapol

Adaptive Pole Fitting for Quantum Many-Body Physics

agama

Action-based galaxy modeling framework

alens

a Living ENsemble Simulator -- a lens to help you watch biophysics

alens_analysis

Postprocessing & analysis scripts for aLENS data

alphafold

Open source code for AlphaFold.

athena_3dviz

baobzi

An adaptive fast function approximator based on tree search

baobzi.jl

Wrapper library for Baobzi interpolator library

bayes-kit

Bayesian inference and posterior analysis for Python

binary_classification_metrics

Visualizations and other code for exploring binary classification metrics.

binderhub

Deterministically build docker images from a git repository + commit

bio-cca

Code accompanying the paper "A biologically plausible neural network for multi-channel Canonical Correlation Analysis"

bio-lda

Code accompanying the paper "A linear discriminant analysis model of imbalanced associative learning in the mushroom body compartment"

bio-nica

Code for reproducing the experiments in the paper "Bio-NICA: A biologically inspired single-layer network for Nonnegative Independent Component Analysis"

bio-rrr

Demo code for NeurIPS 2020 paper.

bio-sfa

Code for reproducing the experiment from the paper "A biologically plausible neural network for Slow Feature Analysis"

blastospim_web

Generate a web site supporting the Blastospim mouse embryo research project.

boxcodes3d

This repository contains box codes for evaluating volume potentials for Laplace, Helmholtz, Maxwell, and Stokes

c2py

Clair/c2py low level library

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

caiman_central

Central hub for resources related to Caiman calcium imaging analysis package.

caiman_use_cases

Supplementary repo for caiman, contains demos of external use cases

catvae

Categorical Variational Autoencoders

ccn-software-fens-2024

Materials for CCN software workshop at FENS 2024

ccn-template

Template repository for CCN software projects

ccq-software-build

CCQ software build scripts

chemdoodlewidget

Proxy widget embedding of the ChemDoodle web components.

clair

Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

comptools24

Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.