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awesomeimager

Application for volumetric imaging using an Electrically tunable lens (ETL)

bigvolumeviewer-core

bioimageinformaticswithfiji

7 sessions workshop about bioimage analysis

cloudmasking

Testing cloud and shadow detection for remote sensing

cocoa_plantations_detection

Detecting cocoa plantation in Ivory Coast using Sentinel-2 remote sensing data

course

The Hugging Face course on Transformers

deafrica-coastlines

Extracting tidally-constrained annual shorelines and robust rates of coastal change from freely available Earth observation data at continental scale

deafrica-sandbox-notebooks

Repository for Digital Earth Africa Sandbox, including: Jupyter notebooks, scripts, tools and workflows for geospatial analysis with Open Data Cube and xarray

deafrica-scripts

deep-learning-for-earth-observation

Application of deep learning for earth observation.

eo-learn

Earth observation processing framework for machine learning in Python

eo-learn-examples

Examples of Earth observation workflows that extract valuable information from satellite imagery, giving you hints and ideas how to use the EO data.

figureonelab

A running start for your computational biology portfolio.

hands-on-gradient-boosting-with-xgboost-and-scikit-learn

Hands-On Gradient Boosting with XGBoost and Scikit-learn Published by Packt

helloworld

Source tree practice 1

imprs-programming-course

live-video-magnification

An OpenCV/Qt based realtime application for Eulerian Video Magnification / Motion Magnification. Works with multiple videos and cameras at the same time and let's you export the magnified videos.

mach3_dopm_manual

Manual for Mach3 Light-sheet Systems

napari-intro-tutorial-scipy2022

Materials for the "Interactive image analysis with napari " workshop presented at SciPy 2022

nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. With outputs to numpy, dask, and xarray

notebooks

Notebooks using the Hugging Face libraries 🤗

npy2bdv

Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.

opm

Control, reconstruction, and analysis code for oblique plane microscopy.

plate_generator

Generate synthetic microtitre plate data with common HTS artefacts

platemate

Data analysis for 96 wells and multi-plate wells

prml

Repository of notes, code and notebooks in Python for the book Pattern Recognition and Machine Learning by Christopher Bishop

pycro-manager

Python control of micro-manager for customized data acquisition

pyimagej

Use ImageJ from Python

qpi-stitching-2d-3d

Preprocessing for 2D/3D stitching of phase images in Python, with some BigStitcher integration.

sentinelhub-py

Download and process satellite imagery in Python using Sentinel Hub services.