fnothaft/toil-lib
A common library for functions and tools used in toil-based pipelines
Repositories
fnothaft/adam-fs-benchmarks
fnothaft/toil-wdl-api
Exemplar API that mediates Toil with a WDL front-end and workflow tracking.
fnothaft/gnocchi
fnothaft/toil-scripts
fnothaft/IEEE_TBD_2016
fnothaft/cgcloud
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
fnothaft/gatk-whole-genome-pipeline
End to end pipeline for calling variants against an entire genome
fnothaft/conductor
Efficient, distributed downloads of large files from S3 to HDFS using Spark.
fnothaft/hadoop-interfaces
fnothaft/corretto
Read error correction utilities.
fnothaft/siren-release
Public version of the SiRen project
fnothaft/adam-regression
Regression testing setup for ADAM.
fnothaft/gt
fnothaft/ananas
fnothaft/mango
Visualization tools for genomic data. Apache 2 licensed.
fnothaft/snark
A nested vector library for Scala.
fnothaft/blog
fnothaft/qc-metrics
Read and variant metrics, useable for pipeline quality control purposes. Apache 2 licensed.
fnothaft/cannoli
A little, Apache 2 licensed pipe.
fnothaft/eggo
Ready-to-go Parquet-formatted public 'omics datasets
fnothaft/adam-queries
Small queries to run on ADAM for GDA.
fnothaft/training
Training materials for Strata, AMP Camp, etc
fnothaft/incubator-parquet-mr
Mirror of Apache Parquet
fnothaft/SparkMontage
fnothaft/bdg-recipes
Recipes using BDG projects. Apache 2 licensed.
fnothaft/bdg-utils
General (non-omics) code used across BDG products. Apache 2 licensed.
fnothaft/server
A reference implementation of the APIs defined in the schemas repository.
fnothaft/PacMin
Assembler for PacBio reads. Apache 2 licensed.
fnothaft/homebrew-science
Scientific formulae for the Homebrew package manager