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brains.damid

Scripts for processing DamID-seq and Microarray data in drosophila brains and Kc167 cells

dam

DamID analysis of raw sequence data

damid-seq

A set of scripts used to analyze DamID-seq experiments in the Laboratory of Analysis of Gene Regulation of IMG RAS, Moscow

damid.bins

Scripts for DamID-seq processing

damid.to.genes

Script to assign results from DamID experiment to genes from flybase

damidseq_pipeline

An automated pipeline for processing DamID sequencing datasets

datasets

Includes sample datasets for machine learning

deeptools

Tools to process and analyze deep sequencing data.

dm3

R package containing basic functions and data related to dm3 r5.57 release of Drosophila melanogaster genome

elys

work with nucleoporins and lamins in drosophila testes

elys_embryos_2022

Collection of scripts used for the research of Elys protein in Drosophila melanogaster

imagej-nuclear-profiles

lam_sperm

Collection of R scripts used to analyze bioinformatic data for 'Changes in genome architecture at two consecutive stages of Drosophila spermatogenesis' by Artem A. Ilyin

paintshop_dna_qc

R script for assessing the DNA probes made in PaintSHOP (for Drosophila melanogaster)

piccolo

A little script that looks for piRNA clusters based on small RNA library coverage

pipipes

piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

r-counts

script who count statistic by data from DamID script

rdml.qpcr

obtaining data from BioRad qPCR machine

stepic_webdev

suroq

A pipeline for quick and dirty QC of your small RNA-seq libraries focused on piRNA.

te-aid

te_motif

Shiny app for screening for core promoter occurrences close to expressed transposons TSSs.

te_profiles

A Shiny app for plotting bedgraphs on short sequences.

te_venns

A Shiny app showing active TE insertions shared between 3 Drosophila tissues (1 tissue was treated).

test_pdf

Test pdfs for working with LLMs