forrestckoch Goto Github PK

ca_sars-cov-2_models

cidr

Clustering through Imputation and Dimensionality Reduction

clusterpoolsh

Bash script for managing multiple compute pools drawing from the same queue. Designed for use on several nodes with a common filesystem.

datatypes

A little library of data structures I've written for practice

dcdf

dtipipe

My personal DTI processing scripts

forrestckoch.github.io

limma

mapnet

Predict age from MRI data alone

mitml

Tools for multiple imputation in multilevel modeling

modulesort

Framework for combining Merge-Sort with modular data types and sorting algos

mpru-covid-cancer-project-part2

mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

psd

psychoblocks

PychoPy implementation of n-back, and facename fMRI tasks

pt-sdae

PyTorch implementation of SDAE (Stacked Denoising AutoEncoder)

saucie

scikit-learn

scikit-learn: machine learning in Python

scrna-dimensionality-reduction

A comparison of dimensionality reduction methods in scRNA data

scrna.seq.datasets

Collection of public scRNA-Seq datasets used by our group

stan-presentation

tga

Implementation of Trimmed Grassmann Average (TGA) by Hauberg S et al. in Python

ttestvwilcox

vasc

Variational autoencoder for single cell RNA-seq datasets

vpac

VPAC: Variational projection for accurate clustering of single-cell transcriptomic data