Related Issues (20)
- Chunk specific runtime artefacts in clusterrmdup HOT 3
- Add all parameters to configs? HOT 1
- Add phasing with HapTree-X
- Enble lariat as mapper for 10x and stLFR reads.
- Filter out barcodes not matching pattern. HOT 1
- Rule map_sort sometimes fails for ema
- where is chr1mini.fasta? HOT 1
- How to use wfa2tenx or BLR_metagenomics? HOT 2
- New phasing algorithm: SpecHap
- Update use of read groups
- Enable subsampling of input FASTQ HOT 1
- Make barcode merging configurable HOT 3
- starcode runs out of memory for large datasets HOT 4
- Rethink phaseblock length plot in report HOT 3
- Snakemake version >=6.5 does not schedule jobs optimally HOT 1
- Generate SV VCF as part of final output.
- Include software versions in report
- MultiQC 1.12 not compatible with BLR HOT 1
- gatk HaplotypeCaller filters out QUAL < 30 by default HOT 1
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