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Name: Frietze Lab @ UVM
Type: Organization
Bio: Bioinformatics software, scripts, and analysis projects developed by the Frietze Lab
Name: Frietze Lab @ UVM
Type: Organization
Bio: Bioinformatics software, scripts, and analysis projects developed by the Frietze Lab
Michael Mariani variation of peak calling method by Kim et al. Nature 2020
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
code for chip qc
Apply tSNE for analysis of ChIPseq and related dataset
General ChIPseq and epigenetic-seq workflow R package with support for t-SNE and UMAP to discover combinatorial epigenetic patterns.
For Dropseq single-cell RNA-seq analysis
Make it easier to with GO terms in R.
Scripts and other computational resources for the EIDA core
helpful R scripts for various purposes
from 4c fastq files generate cis interactions and circos plots
R package to do peak saturation analysis for ChIP-seq.
R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
R package to help with TAP pipeline outputs
An example of a script for RNA-Seq alignment using the SLURM job scheduler on VACC
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.