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frogsicle's Projects

anno_from_m8 icon anno_from_m8

various things working towards a functional summary of large blasts to nt

canu icon canu

A single molecule sequence assembler for genomes large and small.

greenlanding icon greenlanding

Scripts and more created during the trivago hackathon (http://www.trivago.de/hackathon) by team GreenLanding.

mammut icon mammut

sadly unorganized compilation of scripts used for the maize paralog project

naivlix1 icon naivlix1

looking at sequence data with neural networks, in about as naive a way as possible / just for fun and learning

picard icon picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

vcfhd icon vcfhd

Simple tools for getting from VCF and reference genome + gff to fastas for alternate genome and transcriptome. Warning: it's a work in progress and probably crawling with bugs.

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