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desirna

State of the art software for RNA sequence design. The first to solve the Eterna benchmark!

m2seq_mod

Analysis of 2D signal in mutate-and-map sequencing data

pdb_probing_coloring

Python script for chaniging b_factor values in a PDB file to values representing RNA chemical probing reactivies. The file with modified b_factor can be used to visualize the reactivities in structure visualization tool such as PyMOL or Chimera.

random_scripts

rna-pdb-tools

🔧rna-pdb-tools: a toolbox to analyze structures and simulations of RNA - docs @ http://rna-pdb-tools.rtfd.io & tour @ http://mmagnus.github.io/rna-pdb-tools/#/

rna_pymol_plugins

simrna_example_files

SimRNA is a computational method that performs a Monte Carlo simulation of a system composed of one or several chains of ribonucleic acid (RNA). This repository contains data for SimRNA Replica Exchange Monte Carlo (REMC) simulations. The simulations were performed to model the three dimensional structure of 3D structure of adenine riboswitch aptamer domain (PDB ID: 5SWE).

simrna_scripts

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