funkelab Goto Github PK

all_one

The map of the funkelab gather.town https://gather.town/app/vwlR4yOEllqSX3ze/funkelab

arid

Affinity Representing Instance Descriptors

augment

Simple elastic augmentation for ND arrays

blinx

blinx_paper

blinx paper

brembow

Express marker proteins (“cages” in the following) randomly in cells, image using electron microscopy (EM), and use machine learning methods to identify cages and thus watermark cells. Apply the method to EM volumes of neural tissue.

cellulus

Unsupervised Instance Segmentation in Microscopy

contraband

dacapo

dacapo-dashboard

daisy

Block-wise task scheduling for large nD volumes.

dapi

Discriminative Attribution from Counterfactuals

dnmfx

Distributed NMF with Jax

elegraph

fatepredict_experiments

fictus.aggregatum

A dataset of fictional cells with protein aggregates.

funlib.evaluate

funlib.geometry

A package for Coordinates, Rois and common operations in Coordinate spaces

funlib.learn.jax

funlib.learn.tensorflow

Commonly used `tensorflow` models and losses.

funlib.learn.torch

Pytorch Models

funlib.match

Graph-matching algorithms

funlib.math

funlib.persistence

Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

funlib.run

Python wrapper for submitting jobs via bsub with the option to do so in a container environment.

funlib.segment

Tools to segment graphs and volumes

funlib.show.neuroglancer

Scripts and helpers for the neuroglancer WebGL viewer.

gunpowder

A library to facilitate machine learning on multi-dimensional images.

i2k_gunpowder_tutorial

Gunpowder tutorial given at the I2K 2020 conference

ilpy

Unified python wrappers for popular ILP solvers