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lastal: can't interpret TAB about redundans HOT 5 CLOSED

apelin20 avatar apelin20 commented on July 25, 2024
lastal: can't interpret TAB

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Comments (5)

lpryszcz avatar lpryszcz commented on July 25, 2024

which version of LAST are you using (lastal --version)?
I guess you need to update your LAST installation to version 700+.

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shyamrallapalli avatar shyamrallapalli commented on July 25, 2024

Yes it is an issue with LAST version,
in earlier version example 581-f uses different options
-f: output format: 0=tabular, 1=maf (1)
so lastal was not performed at all, it exits by printing
lastal: can't interpret: TAB

so i suggests couple of points
@lpryszcz could you please

  1. indicate version of the softwares you recommend installing in README
  2. implement some exception raising to alert such issues

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lpryszcz avatar lpryszcz commented on July 25, 2024

@shyamrallapalli I have included version in README. implementing exception raising will take a bit more time...

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shyamrallapalli avatar shyamrallapalli commented on July 25, 2024

nice 👍
and congratulations for the manuscript

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lpryszcz avatar lpryszcz commented on July 25, 2024

I have implemented LASTal version checking in the latest commit.

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