Comments (2)
from braker.
Hi Katarina,
Apparently the issue raised because I had two versions of augustus and one of was not suitable for the analysis,
Cheers,
Luis Alfonso.
from braker.
Related Issues (20)
- Overlapping genes in gtf HOT 5
- gm_key not found HOT 2
- No protein.fa file generated after running BRAKER2
- ERROR in braker.pl at line 7009, failed to execute: ensure_n_training_genes.py HOT 5
- Format for protein-to-genome alignment HOT 2
- Annotation score is >90% BUT Gene Number is very high , almost double HOT 4
- No protein fasta generated
- Genemark gmes_petap.pl fail, too few introns, one sample not others HOT 2
- No start value for parameter in config file error HOT 1
- run test1 error HOT 1
- braker1 stoped after the output of augustus.gff, augustus.aa,augustus.gtf, augustus.gff3
- Tesebra gene predictions are very low HOT 1
- How similar have to be two organisms to be considered 'short evolutionary distance'? HOT 1
- The provided input data is not sufficient for running braker.pl! HOT 1
- The Useexisting parameter of BRAKER when turned on will ignore the hints generated previously from proteins and rna-seq during the training of augustus? HOT 1
- Gene number predicted in Braker.gtf is the same as Augustus.hints.gtf/gff. HOT 1
- braker predictions has very low busco scores, although I already used 31 RNA samples HOT 4
- Clarification on BAM files used in BRAKER HOT 1
- ERROR in file ~/braker.pl at line 6586 ; gmes_petap.pl line 1946. HOT 5
- Masked vs. Unmasked Genome Question HOT 3
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from braker.