Comments (1)
The LGAM module deal with each assembly in preliminary assemblies separately. So, it is generates fq.gz file for each linkage group in each preliminary assembly. If you want to reduce this amount of data you can run the step 11 for the linkage groups from only one of preliminary assemblies
Best
Mohamed
from gala.
Related Issues (20)
- Calculation time of bwa step HOT 1
- Can we replace bwa to minimap2? HOT 1
- How to assemble gap-free chomosome by gala according hifi and ONT data? HOT 4
- how to prepare ref fasta file HOT 3
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- How many draft assemblies should I need? HOT 1
- Parameters for multi-threads? HOT 1
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