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afq

Automated Fiber Quantification

analyzeprf

anatrois

Creates all kinds of volumetric ROIs that later can be used in diffusion MRI or other modalities. Integrates freesurfer, atlases, and other tools.

bcblviennasoft

Code to synch the same stimuli in Vienna and BCBL

braintools

Useful tools for analyzing neuroimaging data

data

Data Readers and Writers

dcm2niix

DICOM/PAR-REC conversion to nifti using Rorden's dcm2niix

deep-retina

deep-retina is a project to build a convolutional neural network that can predict retinal ganglion cell responses to natural stimuli with high accuracy.

definingwhitematter

code for the Defining WM project

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

exchange

Flywheel Exchange

fastbook

The fastai book, published as Jupyter Notebooks

fingerprint-qmri

floc

Functional localizer experiment used to define category-selective cortical regions

freesurfer_mrtrix_afni_matlab_tools

Several MRI matlab tools for Freesurfer, AFNI and mrtrix to read/write files. To be used with ToolboxToolbox

hcp-annot-vc

Annotation tool and data repository for the Human Connectome Project Visual Cortices

hippovol

Automatic segmentation of MRI hippocampal volumes along the longitudinal axis

juliatutorials

Learn Julia via interactive tutorials!

knkutils

MATLAB utility functions written by Kendrick Kay

launchcontainers

life

lmctest

lmctest

mni_rois

Store here ROIs that will be downloaded and converted to individual space by the FS container

mrq

mrQ_BoxJoinBox

nipreps-book

nipype

Workflows and interfaces for neuroimaging packages

nupic

Numenta Grok NuPIC

nupic-1

Numenta Platform for Intelligent Computing

nupic-darwin64

Python distribution for NuPIC on OS X

nupic.vision

Tools for using Numenta/nupic on visual problems like image recognition.