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Hi there šŸ‘‹

Hi, I'm Garth and welcome to this unique corner of the internet! I am a classically trained biochemist who joined the dark side computational side of biology. In my day-to-day position, I help life scientists understand the meaning of their sequencing data, and how that relates to their project's hypotheses. In the Maxson Lab where I currently work, I provide bioinformatic support to all lab members and write pipelines to analyze new sequencing datasets. I am always interested in the latest bioinformatic tools and trends, and I enjoy working with biologists at all levels of the computational spectrum.

When provided the chance, I develop/contribute to open-source bioinformatic software such as GoPeaks, CITEViz, MultiQC, and HINT-ATAC. Get to know me more by visiting my website and my twitter!

Technical Skills

Programming Languages šŸ’»

Python R Shell Script Go

Proficient tools šŸ› ļø

snakemake Anaconda Git snakemake

Bioinformatic Assays šŸ§¬

DNA

CHIP

ATAC

CT

CR

RNA-Seq

scRNA-Seq

CITE-Seq

What I'm doing now

  • šŸ”­ Iā€™m currently working on: profiling epigenetic changes in acute myeloid leukemia with the Maxson and Braun Labs at the Oregon Health and Science University
  • šŸŒ± Iā€™m currently learning: Nextflow, docker, and package submission to conda forge
  • šŸ’¬ Ask me about: bioinformatics, epigenetic analyses, oncology, informational interviews
  • āš” Fun fact: black cats are very photogenic šŸˆ

My Programming Stats

Top Langs

Garth Kong's Projects

acnh_tidytuesday icon acnh_tidytuesday

What if animal crossing villager's personalities are affected by their birth month?

go-auc icon go-auc

Take the area under the curve using GO

mergebams icon mergebams

Merge multiple bam files and generate bigwig tracks

motif-mark icon motif-mark

Draws genes and motifs given a FASTA and motifs of interest

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

summit icon summit

Ultralight and fast implementation of GoPeaks to call peaks in CUT&Tag/CUT&RUN data

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