gatk-workflows Goto Github PK
Name: GATK workflows
Type: Organization
Bio: Official GATK workflows published by the Broad Institute's Data Sciences Platform
Twitter: gatk_dev
Location: Cambridge, MA USA
Name: GATK workflows
Type: Organization
Bio: Official GATK workflows published by the Broad Institute's Data Sciences Platform
Twitter: gatk_dev
Location: Cambridge, MA USA
Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
Workflows for processing high-throughput sequencing data for variant discovery with GATK3 and related tools
Workflows for germline short variant discovery with GATK3
Basic joint genotyping with GATK4. NOT Best Practices, only for teaching/demo purposes.
Simple workflow to validate a VCF (or GVCF)
This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
This repo will be archived soon, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
Workflows for germline short variant discovery with GATK4
This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
This repo is archived, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
This generic wdl script will be for users seeking to quickly run a shell command
Miscellaneous workflows optimized by Intel to be fast-running
Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure
Workflows for processing and variant discovery with GATK optimized by Intel for on-premises infrastructure
Workflows for germline short variant discovery with GATK4 optimized by Intel for on-premises infrastructure
Workflows for data pre-processing and initial calling of somatic SNP, Indel, and copy number variants optimized by Intel for on-premises infrastructure
Workflows for converting between sequence data formats
Workflows for validating sequence data formats
Short workflows to run common tasks.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.