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atholl

datasets_class

Simulated Datasets for class use

disk_check

dummy workflow to check gcp config

markdowns

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

test-datasets

Test data to be used for automated testing with the nf-core pipelines

test_data

test data repository to act as interim for nf-core

varia

Repository for Varia package, containing Varia VIP and Varia GEM

varia-var-gene-sequence-prediction

This version of Varia is outdated, please use the Varia repository. Varia predicts the sequence of var genes in Plasmodium falciparum. Varia is designed to use the DBL alpha tags supplied by the user to find the full sequenc of the var gene, by comparing the tag to the Pf3k database for near identical tag regions. It then clusters all hits and presents the largest sequence of each clusteron the Circos plot and in the summary files.