gdevailly Goto Github PK

amatmacro

amatmacro website

edinbr-talks

Slides or talk notes from EdinbR meetings

encode-tfbs-replicate-quality

R code for "Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource" article, submited to FEBS letter.

encodernaseqpariwisecorrelation

scatterplots and PCC from ENCODE RNAseq

frrrenchies

Liste de ressources R utiles pour les Français

gdevailly.github.io

hackaviz_tlse2018

hackaviz 2018 du groupe Toulouse Dataviz.

heatstarseq_gh

A R/shiny web application to browse and compare public RNA-seq / ChIP-seq / CAGE datasets

interactive-heatmap-with-r

R shiny application comparing performance of d3heatmap and plot.ly heatmap

isoformswitchanalyzer

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

lettercase

Utilities for turning characters into various cases: camelCase, Title Case, lower case, upper case, etc.

liver_mouse_rat

R script for analysis of Mouse and Rat liver microarray data

mappability_of_tad_borders

Inverstigating the genomic mappability of TAD borders

meetingsr

A list of R conferences and user groups

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

monnaiemoderne

source pour le blog Monnaie moderne

oitis_array_analysis

Rscripts for gene expression array anaysis of otitis media with effusion samples

olgtron

Une application R/Shiny pour calculer votre niveau d'embourgeoisement.

perepigenomicsanalysis

Data analysis part of the PEREpigenomics web-app

r_future_edinbr_presentation

Presentation of the R package future, for EdinbR

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-vizfada

rug-toulouse-website

R Toulouse Website

rweekly.org

R Weekly

scater

Clone of the Bioconductor repository for the scater package, see https://bioconductor.org/packages/devel/bioc/html/scater.html for the official development version.

scfeaturefilter

seqplots

SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

siteperso

Source for personal website

tidynomicon

The Tidynomicon: An Introduction to R for Data Engineers and Others