Comments (4)
Change label of the following terms to change label to "symbiont-mediated suppression of cytoplasmic... "
- GO:0039537 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway
- GO:0039554 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of host MDA-5 activity
- GO:0039540 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of host RIG-I activity
- GO:0039724 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IKBKE activity
- GO:0039548 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity
- GO:0039557 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF7 activity
- GO:0039545 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity
- GO:0039723 suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of TBK1 activity
- GO:0141077 suppression of host interferon-mediated signaling pathway
- GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
- GO:0140884 suppression by virus of host type II interferon-mediated signaling pathway
- GO:0140885 suppression by virus of host type III interferon-mediated signaling pathway
- GO:0039580 suppression by virus of host PKR signaling
- GO:0039560 disruption by virus of host JAK-STAT cascade via inhibition of host IRF9 activity
- GO:0039574 disruption by virus of host JAK-STAT cascade via inhibition of host TYK2 activity
- GO:0039576 disruption by virus of host JAK-STAT cascade via inhibition of JAK1 activity
- GO:0039562 disruption by virus of host JAK-STAT cascade via inhibition of STAT activity
from go-ontology.
Obsoletions:
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GO:0140886 suppression by virus of host interferon-mediated signaling pathway >> obsolete & replace by GO:0141077 symbiont-mediated suppression of host interferon-mediated signaling pathway: 0 annotations, 1 KW mapping
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GO:0039573 | suppression by virus of host complement activation >> obsolete & replace by GO:0042784 symbiont-mediated suppression of host complement activation
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GO:0039644 suppression by virus of host NF-kappaB cascade >> replaced by GO:0085034 'symbiont-mediated suppression of host canonical NF-kappaB cascade'
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GO:0141076 symbiont-mediated suppression of host TRAF-mediated signal transduction >> replace by GO:0039527 'disruption by virus of host TRAF-mediated signal transduction' (new term, no annotations, no mappings) & rename symbiont-mediated suppression of host TRAF-mediated signal transduction
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GO:0141077 'symbiont-mediated of host interferon-mediated signaling pathway' >> replace by GO:0140886 suppression by virus of host interferon-mediated signaling pathway (new term, no annotations, no mappings) & rename symbiont-mediated suppression of host TRAF-mediated signal transduction
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GO:0141075 symbiont-mediated suppression of host JAK-STAT cascade >> replace by GO:0039514 disruption by virus of host JAK-STAT cascade & rename symbiont-mediated suppression of host JAK-STAT cascade
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GO:0141105 symbiont-mediated suppression of host toll-like receptor signal transduction >> replace by GO:0039722 'suppression by virus of host toll-like receptor signaling pathway' (new term, no annotations, no mappings) & rename symbiont-mediated suppression of host toll-like receptor signal transduction
from go-ontology.
Created new grouping term
+[Term]
+id: GO:0141136
+name: symbiont-mediated perturbation of immune response-activating signaling pathway
+namespace: biological_process
+def: "A process in which a symbiont interferes with, inhibits or disrupts the normal execution of a signaling pathway that activates the host immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction." []
+is_a: GO:0052170 ! symbiont-mediated suppression of host innate immune response
+created_by: pg
+creation_date: 2023-12-21T13:56:09Z
from go-ontology.
Dear all,
The proposal has been made to obsolete
Obsoletions:
- GO:0140886 suppression by virus of host interferon-mediated signaling pathway >> obsolete & replace by GO:0141077 symbiont-mediated suppression of host interferon-mediated signaling pathway
- GO:0039573 | suppression by virus of host complement activation >> obsolete & replace by GO:0042784 symbiont-mediated suppression of host complement activation
- GO:0039644 suppression by virus of host NF-kappaB cascade >> replaced by GO:0085034 'symbiont-mediated suppression of host canonical NF-kappaB cascade'
- GO:0141076 symbiont-mediated suppression of host TRAF-mediated signal transduction >> replace by GO:0039527 'disruption by virus of host TRAF-mediated signal transduction' & rename symbiont-mediated suppression of host TRAF-mediated signal transduction
- GO:0141077 'symbiont-mediated of host interferon-mediated signaling pathway' >> replace by GO:0140886 suppression by virus of host interferon-mediated signaling pathway & rename symbiont-mediated suppression of host TRAF-mediated signal transduction
- GO:0141075 symbiont-mediated suppression of host JAK-STAT cascade >> replace by GO:0039514 disruption by virus of host JAK-STAT cascade & rename symbiont-mediated suppression of host JAK-STAT cascade
- GO:0141105 symbiont-mediated suppression of host toll-like receptor signal transduction >> replace by GO:0039722 'suppression by virus of host toll-like receptor signaling pathway' & rename symbiont-mediated suppression of host toll-like receptor signal transduction
The reason for obsoletion is that we are replacing the redundant 'viral' terms with their corresponding 'symbiont terms.
All annotations are by UniProt and AgBase and will be automatically remapped. UniProt Keyword mappings will be migrated.
You can comment on the ticket: #26686
Thanks, Pascale
from go-ontology.
Related Issues (20)
- Terms with RHEA in definition xref not in general xref HOT 3
- Terms with 2 RHEAs as definition xref HOT 1
- GO:0015280 amiloride-sensitive sodium channel activity is not a ligand-gated sodium channel activity
- EC cross references in definition, not in general cross references HOT 3
- Obsoletion request: trehalose biosynthesis in response to heat stress (GO:0090441) HOT 1
- Add check to prevent empty literal values HOT 1
- NTR: UDP-glucose biosynthetic process HOT 9
- Missing MetaCyc pathway xrefs (carbohydrate metabolism)
- NTR: [RNA glycosylation] HOT 1
- input/output chemicals on GO:0061624/R-HSA-70350 HOT 2
- 'glycogen biosynthetic process' parents HOT 3
- NTR's ??: additional subtypes of "isotype switching to IgG isotypes (GO:0048291)
- Obsoletion request:GO:0044255, GO:0097384, GO:0044242 cellular lipid metabolic, biosynthetic and catabolic process terms
- Review of glycosaminoglycan metabolic process (GO:0030203) and proteoglycan metabolic process (GO:0006029) branches HOT 1
- Proposed changes to cellular anatomical entity from COB meeting HOT 3
- calcium-activated cation channel activity (GO:0005227) HOT 1
- Textual definition update: GO:0043490 malate-aspartate shuttle
- Obsoletion with replacement: GO:0006948 induction by virus of host cell-cell fusion & GO:0060140 modulation by virus of syncytium formation via plasma membrane fusion
- Response to phosphate HOT 4
- go.obo and go-basic.obo have different data-version in snapshot HOT 2
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from go-ontology.