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bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cnvkit

Copy number variant detection from targeted DNA sequencing

collections

📂 Golang 实现的 collections 模块，灵感来自 Python queue 和 Python collections

delfmut

stable DEtection of Low-Frequency MUTations in duplex sequencing

delfmut-dev

stable DEtection of Low-Frequency MUTations in duplex sequencing

golang-fisher-exact

Fisher's exact test for 2x2 contingency tables, in Golang

googletest

GoogleTest - Google Testing and Mocking Framework

gperftools

Main gperftools repository

handlebam

Implement the four steps in RNA-seq pipeline:mapping quality filter, deduplication, set annotations and stat gene expression data

hts

biogo high throughput sequencing repository

htscodecs

Custom compression for CRAM and others.

htslib

C library for high-throughput sequencing data formats

irelate

Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang

isa-l

Intelligent Storage Acceleration Library

jsoncpp

A C++ library for interacting with JSON.

libdeflate

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

ncsv

NoahCare Structural Variant Calling

plotfigures

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

slice

Type-safe functions for common Go slice operations

spoa

SIMD partial order alignment tool/library

st_barcode_map

stereopy

A toolkit of spatial transcriptomic analysis.

stereopy_data

Test data of stereopy

store

bíogo data store repository

tabixpp

C++ wrapper to tabix indexer

vcfgo

a golang library to read, write and manipulate files in the variant call format.

vcpkg

C++ Library Manager for Windows, Linux, and MacOS

yaml-cpp

A YAML parser and emitter in C++