Unable to run geneSCF on linux about genescf

[decodebiology]

You must convert 'UniProt Accession' to 'Gene Symbols' or 'Entrez Gene ID' or 'HGNC symbols'. Check out if this helps, https://www.biostars.org/p/283347/

Good luck.

[decodebiology]

Will you please provide your sample input file?

[yxu405]

Sure!

These are the annotations I obtained from the GO website

[decodebiology]

Hi,

Listed identifiers ae protein/peptide IDs. GeneSCF only accepts Gene symbol (HGNC) or Entrez gene IDs.

Example:

'A0A023HHK9' can be given as either 'TET1' (HGNC) or '80312' (Entrez).

[yxu405]

I know this is an easy question to ask, I am pretty new at using this, but is there any way that I can convert this list of annotations to gene IDs? The list I obtained from, QuickGo, wouldn't show me the gene IDs in group; as I had to click in one by one.

[decodebiology]

I will be closing this issue now. You are welcome to contact me for future queries.