Comments (3)
Hi @nmc97,
It appears that Xiang introduced a bug in GEMMA sometime between versions 0.94a and 0.95a; I was able to reproduce your bug with GEMMA 0.95a, and I did not get a segmentation fault with GEMMA 0.94a. So one temporary solution would be to download the v0.94 executable from here or here.
@xiangzhou, are you able to reproduce this segmentation fault? If so, could you investigate this bug?
Peter
from gemma.
This bug inside mvlmm.cpp is fixed now.
from gemma.
Thank you both!
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Related Issues (20)
- Errors when running GEMMA in an SoS step but ok in command line HOT 1
- FAILED error HOT 1
- Issue with GEMMA-Wrapper HOT 1
- Parsing input file '' failed in function AnalyzeBimbamGXE
- Enforce failed for number of analyzed individuals equals 0. in src/param.cpp at line 2073 in ProcessCvtPhen HOT 2
- long haplotype as population structure
- basic usage doesn't work
- Gemma run-time for Estimate Relatedness Matrix calculation
- very low number of analyzed SNPs/var
- The input files includes 26 linkage groups but the output files only includes 22 linkage group
- Categorical covariates
- Pve is .999 HOT 1
- gemma-wrapper:279:in `<main>': Expected GEMMA -a genotype file switch (RuntimeError)
- Got a nan in the p-value results HOT 1
- gsl: newton.c:88: ERROR: function value is not finite 3.08%
- GSL ERROR: function value is not finite in brent.c at line 58 errno 9
- WARNING: Brent did not converge
- Why the diagonal of relatedness matrix is not equal to 1 or a constant value? HOT 1
- The problem of filtering snp parameters
- ERROR: Enforce failed for Problem reading FAM file (phenotypes do not match geno file) in src/gemma_io.cpp at line 600 in ReadFile_fam GEMMA 0.98.3 (2020-11-28) by Xiang Zhou and team (C) 2012-2020
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