pindel install fail about pindel

[dpaulino]

I am having the same issue. Have others found a solution?

[EWLameijer]

This error message ("refreader.h:6:1: warning: null character(s) ignored") implies that the refreader.h file has been corrupted somehow (for example, by opening/editing it with a Windows application or whatever).

My first recommendation would be to clone the latest Pindel version, under OSX or (preferably) Linux/Unix:
(git clone https://github.com/genome/pindel) and try install again

If you get the same "null character" warning, I'd open the file on which the problem is reported in an editor and copy-paste its contents to a new file, deleting the old file and giving the new file the name of the old file. Or perhaps by copy-pasting it from Github directly. In any case, this seems to be a file corruption problem of unknown origin.

If none of this seems to work, please let us know!

[Krisloveless]

#59 I tried this by adding "/lib" and it worked. @dpaulino @sclirl