Georgeos Hardo's Projects
Code I wrote which simulates an ammonia synthesis reactor by solving ODE system for flow, shell&tube heat transfer, pressure, and chemical kinetics
A thin wrapper around the matplotlib FuncAnimation class.
Advent of Code 2021
Old hacked together scripts I wrote to speed up some chemical engineering calculations when I was doing chemical engineering
Scripts that I use to make my life easier
Code for 2nd assignment of for 4G1 Mathematical Biology of the Cell
Parallel implementation of the Gillespie algorithm in Python, compiled to machine code for ultra speed. Simulate single molecule chemical reactions at speed.
An interactive phase contrast microscope model
Segment fluorescence images of timelapse mother machine experiments quickly and with ease
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
A simple tool to extract ND2 files to Zarr, PNG or TIFF
Preprocessing code for ND2 files generated by Nikon microscopes.
Implementation of the model in Models of stochastic gene expression (doi:10.1016/j.plrev.2005.03.003)
Python Mother Machine Manager
Create/manipulate N-dim raster geometric shapes.
Hackmed 2021 Entry: Finding possible synthesis pathway routes for drugs in a shortage due to COVID 19
House hunting is no fun. Here's a class which will easily scrape housing information from Rightmove.
Accurate segmentation of bacterial microscope images using synthetically generated image data.
A simple Hugo theme
A Wordpress theme resembling a latex document. Somewhat responsive and supports dark mode.
Yet Another Cell Simulator