gerde Goto Github PK
Name: Xinhui Liao
Type: User
Location: China
Name: Xinhui Liao
Type: User
Location: China
Accucopy is a computational method that infers Allele-specific Copy Number alterations from low-coverage low-purity tumor sequencing Data.
Accurity is a computational method that infers tumor purity and tumor cell ploidy from tumor-normal WGS (whole exome will probably work too) data by jointly modelling SCNAs and heterozygous germline single-nucleotide-variants (HGSNVs).
a lightweight bam file depth statistical tool
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
tools for adding mutations to existing .bam files, used for testing mutation callers
cfMethyl-Seq code
Contamination from Homozygous Alternate Reference Reads
Somatic copy variant caller (CNV) for next generation sequencing
Repository for mRNA Paper and CodonBERT publication.
Concordance and contamination estimator for tumor–normal pairs
A technical report on convolution arithmetic in the context of deep learning
Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
深度学习500问,以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述,以帮助自己及有需要的读者。 全书分为18个章节,50余万字。由于水平有限,书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作,联系[email protected] 版权所有,违权必究 Tan 2018.06
Over 200 figures and diagrams of the most popular deep learning architectures and layers FREE TO USE in your blog posts, slides, presentations, or papers.
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Draw forestplot in R
ggplot geom_lime()
Gerde's blog
Create anatograms using ggplot2
Raster geoms for ggplot2
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
The new source code of the LinearFold, linear-time prediction for RNA secondary structures
Microsatellite Analysis for Normal-Tumor InStability
High-quality methylomes
The Composer of ggplots
Number partitioning in Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.