getzlab Goto Github PK
Type: Organization
getzlab's Projects
10x-cd45-isoform-quantification
absolute
ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38
add_illumina_readgroups_tool
Add readgroups based on Illumina IDs to given BAM
aggregate_tokens_files_tool
A MATLAB script to aggregates multiple PoN token files into a final PoN binary
annomate
Review anything (purities, mutations, etc) within a jupyter notebook with plotly dash and jupyter widgets
annomatetemplate
Template Repo for generating new JupyterReviewer Suites
ascat-parser
Parsing tool from ASCATNGS to alleliccapseg output to use with ABSOLUTE
asymtools2
AsymTools is a package for analyzing transcriptional and replicative mutational strand asymmetries in cancer sequencing datasets.
bladder_cancer_classifier
boiarsky-etal-2022
Code to reproduce methods & results from Boiarsky et. al., Nature Communications 2022
btk_growth_kinetics_analysis
cancerpatientreviewer
Explore integrated data on the patient level interactively in a Dash App, powered by JupyterReviewer
canine
A modular, high-performance computing solution to run jobs using SLURM
canine-tinkering
Repo for tinkering with canine and submitting PRs
capy
Cancer Analysis tools in Python
cllmap
clumps
clumps-ptm
CLUMPS adapted to post-translational modifications.
clumps2
Re-factored code for CLUMPS.
cnv_suite
Compare, Visualize, and Simulate Copy Number Profiles
cpb_melanoma_code
cptac_pancan_ptm_2023
dalmatian
dalmatian is a collection of high-level companion functions for Firecloud and FISS.
demo_wolf_flow
detin
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
drug_info_portal
Script to scan openFDA and cancer.gov
funcotate_aggmaf
a workflow funcotate aggregated MAF from multiple pairs: aggregated MAF-> individual VCFs -> left-align all indels -> funcotate each samples and merge
gcp-vm-tracker
A dashboard for accessing GCP compute instances across different projects
getzlab.github.io
Getz Lab site
gistic2_postprocessing
The repo contains codes (in matlab) to force call GISTIC2 driver events at sample level
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.