Comments (5)
Hello,
can you indicate which version of DIVAnd
you are presently using?
(in the package REPL mode):
(v1.1) pkg> status
Can you also run the tests on DIVAnd
?
Pkg.test("DIVAnd")
from divand.jl.
I'm using DIVAnd v2.3.1 on Julia v1.1.1 DIVAnd passes all tests.
I think I was still on DIVAnd v2.3.0 on Julia v1.0.3. Again passed all tests.
Also, note that I'm using the Julia pre-compiled linux x86 binaries.
Anyway, I've remove the .julia folder form my home directory and reinstalled DIVAnd and all associated packages... And now I'm getting the same problem with Julia v1.0.3...
Reviewing the error, it points to the part of DIVAnd_obs that deals with removing NaN values... And I know the input data contains NaNs (issues regarding interpolation near coasts). Adding some extra code to my scripts to remove the NaN values before running DIVAndrun fixes things in both Julia v1.0.3 and v1.1.1.
Still, doesn't explain why I'm getting the error...
from divand.jl.
Could you post your code or a minimum working example (failing in this case) with a subset of the data, so we can try to reproduce the issue on our machines?
I guess you already tried to de-activate the velocity and the modim?
Indeed DIVAnd can deal with NaN's, in fact they are replaced by zeros and a warning is issued, so that should not be an issue.
from divand.jl.
In the last released version, there is indeed a issue when some observations are equal to NaN in DIVAnd.DIVAndrun. It is fixed in the master version which will be released soon.
If you want to try the "master version" of DIVAnd, you can use:
]dev DIVAnd
We only merge changes in the master version when all test pass. So it is reasonable stable.
Thank you for reporting this issue.
from divand.jl.
For your information, I just released a new version of DIVAnd where this problem should be solved.
If this would not be the case, please re-open this issue or file a new issue.
Thanks for your feed-back.
from divand.jl.
Related Issues (20)
- Http 500 Internal Server Error[π] HOT 3
- [π]High memory consumption and inability to use divandgo or conjugate gradient inversion. HOT 16
- [π] Getting lists of data points that are used for each depth layer HOT 2
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- [Help needed] Correlation length and lengraddepth HOT 16
- Background of all observations over time HOT 15
- [π] When running DIVAnd, artifacts appear which seem to be linked to the bathymetry HOT 33
- L-shape criterium[π] HOT 1
- Sigma coordinates ?[π] HOT 11
- Unhandled Task ERROR: EOFError: read end of file HOT 5
- [π] DomainError when use background HOT 4
- "gradient" effect on DIVAnd maps[π] HOT 20
- 'data access' and 'WEB_visualisation' attributes not correct anymore HOT 3
- [Help needed]How to create and use my bathymetry fileοΌ HOT 7
- Diva2d? HOT 6
- [π]WARNING: Method definition DIVAnd_bc_stretch overwritten HOT 1
- Accurate meaning of the correlation length?[DOC] HOT 8
- adapt ODV files "load" function for WOD data[π] HOT 5
- pcg demanding more memory than direct solver ? HOT 2
- DIVAnd test failed during Pkg.test("DVAnd")[π] HOT 3
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