Name: Gibs
Type: User
Bio: Software Engineer @czbiohub-sf. Bioinformatics PhD interested in developing software to tackle biological problems. NeoVim fanatic.
Twitter: gibsramen
Location: San Diego, CA
Blog: gibsramen.github.io
aviary
bento-tools
A Python toolkit for subcellular analysis of spatial transcriptomics data
birdman
Bayesian Inferential Regression for Differential Microbiome Analysis
birdman-demo
birdman_jr
bisb-bootcamp-2020
FA2020 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program
bisb-bootcamp-2020-module08
claim-scaes
A tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.
cmdstanpy
CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
deicode
Robust Aitchison PCA from sparse count data
dotfiles
emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
empress
A very fast and scalable phylogenetic visualization viewer
empress-analyses
evident
evident-analyses
evident_
Effect size calculations for microbiome data
flanneltano
ganttly
Gantt charts in Python
gemelli
Gemelli is a toolbox for running both Robust Aitchison PCA (RPCA) and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
gibsramen.github.io
A refreshed version of Hyde for Jekyll 3.x
gumap
UMAP projection of Gower distances in Pokemon dataset
hercules
QUBO Solver and Heuristic Toolbox
jupyter-notebooks
Collection of various small projects
metagenomics_pooling_notebook
Jupyter notebooks to assist with sample processing
metawrap
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
mmvec
Neural networks for microbe-metabolite interaction analysis
mtdist
Python package to perform mixed-type distance calculations
nvim
parameterizing-songbird-demo
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
