Gibs's Projects
QIIME2 plugin for calculating the convex hull as a diversity metric
QIIME 2 plugin for machine learning prediction of sample data.
Snakemake workflow for comparison of differential abundance ranks
Case-control matching for microbiome data
Visualize differentially ranked features (taxa, metabolites, ...) in tandem with log-ratios of their sample abundances
This is the development home of the workflow management system Snakemake. For general information, see
Vanilla regression methods for microbiome differential abundance analysis
Collection of up-to-date metadata from TCGA.
VIM plugin to make viewing delimited text files (TSV, CSV, etc.) easier
Project to simulate the card game war
Knight Lab Rotation Winter 2019
Snakemake pipeline for microbiome diversity effect size benchmarking