giovannarosone Goto Github PK
Name: Giovanna Rosone
Type: User
Giovanna Rosone's Projects
bcr_lcp_gsa
Multi-string eBWT/LCP/GSA computation
bcr_qs_decode
eBWT --> FastQ, FASTA, text
bwt2lcp
Compute the LCP array from the BWT of a set of DNA strings.
clcp-macs
Efficient lightweight strategy to solve the multi-string Average Common Substring (ACS) problem, that consists in the pairwise comparison of a single string against a collection of m strings simultaneously, in order to obtain m ACS induced distances.
clcp-macs_parallel
Efficient parallel construction of the colored longest common prefix array
ebwt2indel
ebwt2InDel: find SNPs and InDels from the BWT of a fasta read set
ebwt2snp
Positional clustering of the extended Burrows-Wheeler transform
eds-bwt
The Burrows-Wheeler transform of an elastic-degenerate string
fastqcompression
FASTQcompression (Compressor of FASTQ files)
r-index
An optimal space run-length Burrows-Wheeler transform full-text index
rlbwt2lcp
Compute minimum LCP value for each BWT equal-letter run
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