glebkuznetsov Goto Github PK

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

bio_coding_tutorial

Starting points for learning to code in the biology context

biophys205_final_paper_combinatorial_reprogramming

biopython

Official git repository for Biopython (converted from CVS)

catmaid

Collaborative Annotation Toolkit for Massive Amounts of Image Data

chiptools

Python Toolkit for preprocessing of sequencing data for Synthetic DNA Library experiments

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

cntk

Computational Network Toolkit (CNTK)

cognitive_tools

Rough in-progress notes on cognitive tools

cureffi

CureFFI.org

deepdream

demo_project

Basic Django demo application

dissertate

Beautiful Word and LaTeX dissertation templates.

dotfiles

my .vimrc file and .vim dir

drb_class_notes

Notes from January 2015 Harvard Developmental and Regenerative Biology class DRB 330qc / DRB331hc

freebarcodes

FREE Divergence Error-Correcting DNA Barcodes

imdb_list_scraper

Python script for scraping IMDB lists

jbrowse

Modern JavaScript-based Genome Browser

libnano

helpful tools for working with nucleic acids

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

markdown-guide

This is an easy-to-use guide to markdown. The focus is on clear, legible text and indexed navigation to topic sections.

markdown_watchdog

A script that watches a directory for changes to markdown files, automatically regenerating the .html preview in response to changes.

mascpcr

MASC PCR primer design pipeline

mcadre

metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) for generating draft tissue-specific metabolic models

metacademy-application

Metacademy.org's application code

millstone

Genome engineering and analysis software

mind

a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs

misc_figures

Miscellaneous code to generate figures

misc_scripts

Miscellaneous scripts

nucleic

Low-level manipulation of nucleic acid sequences