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ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

algorithms-for-dna-sequencing

Coursera MOOC Algorithms for DNA Sequencing by Ben Langmead, PhD, Jacob Pritt

bio-rnaseq

The new Sanger Pathogen Informatics RNA Seq analysis pipeline

biocuruguay2015

R / Bioconductor Training Material for Uruguay R Bio Course

blobtools2

Redesigning BlobTools to support interactive data exploration

braker2-docker

Docker container for running braker2 gene finder

cellranger-docker

a cellranger docker to run in my MacBook

cellranger_cromwell

cellranger_nextflow

codespaces

My clone repository

data-scientist-roadmap

Toturials coming with the "data science roadmap" picture.

demultiplex

Demultiplexing pipeline for sequencing data

emul-data-git

cucher 2019 paper

fonts

Patched fonts for Powerline users.

fp101x-content-2015

FP101x - Functional Programming MOOC 2015 Content Repository

insdc-pipeline

SnakeMake pipeline to run BlobTools on public assemblies

katacoda-scenarios

Katacoda Scenarios

minio.s3

An R package to access MinIO storage and querying, customized by Stathias

ml-for-beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

nf-core_modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-training-public

Nextflow training material

panseq

Pan-genomic sequence analysis

python-for-genomic-data-science-2015-coursera

Python for Genomic Data Science 2015 Coursera from Johns Hopkins University

ragtag

Fast reference-guided genome assembly scaffolding

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq_pipeline

rtgr-uoh

A database of tomato genomic variation

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

solanum

Solanum | INTA Castelar | Bioinformática

talgebra1

Taller de Algebra 1