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Operating on pairs of inputs about libmolgrid HOT 3 CLOSED

gnina avatar gnina commented on August 11, 2024
Operating on pairs of inputs

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Comments (3)

dkoes avatar dkoes commented on August 11, 2024 1

It's explained in the paper (https://arxiv.org/pdf/1912.04822.pdf), but you're right that the explanation should be in the online documentation.

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dkoes avatar dkoes commented on August 11, 2024

You would have two labels and two structures in your input types file, like this:
0 1 in1.pdb in2.pdb

provider = molgrid.ExampleProvider()
provider.populate("in.types")
ex = provider.next()
list(ex.labels) # [0.0, 1.0]
len(ex.coord_sets) # 2

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JoshuaMeyers avatar JoshuaMeyers commented on August 11, 2024

Thanks! That's much easier than I thought, is there a link to some documentation on the 'types' file?

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