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18s191

Course 18.S191 at MIT, fall 2020 - Introduction to computational thinking with Julia:

alpine-centrifuge

A alpine-based centrifuge docker image

alpine-nanopack

Docker image of nanopack

bioservices.jl

Julia interface to APIs for various bio-related web services

bpbd

circinteractome

Scrape data from CircInteractome

coffeemurmur

dingtalkbot_test

Test DingdingRobot

emva

flaskapps

Some flask apps for tests.

gcpug_meetup

Slides for presentation

guppy-docker

A docker image for ONT guppy

guppyrunscript

iknug_withdjango

a prototype of a web-based variant annotation tool

intro_circlize

irndb_webcrawler

Scraping lncRNA-mRNA interaction data from IRNdb

julia-dataframes-tutorial

A tutorial on Julia DataFrames package

julia4bioinfo

Some bioinfo-tools implemented with Julia

julia_intro

Slides for introducing Julia to members of TBO

nanojulia

nanopore_talk

Deposit slides from my previous talks which are all about long-read sequencing or nanopore sequencing

nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

nanoqc

nanosatellite

Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.

ont_intro_summary

porequality

This is an early version of POREquality, an R Markdown document designed to be ran as part of a Nanopore local basecalling pipeline.

practices.jl

Improve your Julia programming skill!

protocolgromacs

Automatic gromacs protocol from preparation to production with ligand parametrization through

r-base

R-base docker image for using in China

rcourses

Store some sample codes and handout