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abra2

ABRA2 forked from the original and modified for my own needs. Credit due to original authors of the paper.

alapy_arc

ALAPY COMPRESSOR: FASTQ lossless compressor

allelicbalancechecker

amm21

Command-line tool to run Abstract Mediation Model (Weiner et al 2022, AJHG)

auspice.us

bc-store

breakdancer

SV detection from paired end reads mapping

cancervar

Clinical interpretation of somatic mutations in cancer

clinsv

Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data

convading

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

couplet

coveragemaster

cutevariant

A standalone and free application to explore genetics variations from VCF file

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

devea

an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data

dinozorus

1990'lı yıllara damgasını vuran efsane televizyon oyunu Dinozorus. Amiga 1200 - AGA

ehr-phenolyzer

A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list

ff

gatk

Official code repository for GATK versions 4 and up

gatk-sv

A structural variation pipeline for short-read sequencing

gatk4-rnaseq-germline-snps-indels

Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools

gauchian

A variant caller for the GBA gene using WGS data

genedesign

Synthetic biology library in Perl

glnexus

Scalable gVCF merging and joint variant calling for population sequencing projects

gripper

Find non-reference processed pseudogene insertions from discordant read pair mappings

gtex-viz

GTEx Visualizations

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

idep

Integrated Differential Expression and Pathway analysis

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

intervallists