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gongjing tang's Projects

cdna_cupcake icon cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

isoseq icon isoseq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

isoseq_sa3nup icon isoseq_sa3nup

Documentation and Developers Code Base for Iso-Seq SMRTAnalysis 3.x and beyond

minimap2 icon minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

pbmm2 icon pbmm2

A minimap2 frontend for PacBio native data formats

transcriptclean icon transcriptclean

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

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