Comments (5)
Thanks. Note: need to change "--dir=" to "--directory-prefix" if others use wget.
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You can just mod the provided scripts and use wget. Though figuring out an alternate repository would be probably easier depending on your distro.
from alphafold.
Read the download file in script and get the url, then you can download by ftp
from alphafold.
Still trying to get through the database downloads. Current issue is: rsync: --info=progress2: unknown option. Currently trying --progress in place of progress2
from alphafold.
Switching platform to Ubuntu appears to solve all issues (no modification necessary to scripts) and download is proceeding correctly.
from alphafold.
Related Issues (20)
- (!ดู!) อังคารคลุมโปง เอ็กซ์ตรีม EP.1-8 ตอน ที่1-8 “ทองดี” ดูย้อนหลัง เต็ม เรื่องออนไลน์ไทย ฟรี!
- The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears
- Using rotamers for mutations HOT 1
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- InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform HOT 12
- Alphafold
- alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS HOT 2
- Bulk download from AlphaFold3 server
- optimize alphafold2 speed on different GPUs
- @YiningWang2
- Cannot download pdb70 database
- Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9 HOT 7
- ValueError: Minimization failed after 100 attempts. HOT 4
- Inference speed question.
- Is the AlphaFold2 PDB structures available for download predicted using the UniProt canonical sequence?
- Running AlphaFold on models larger than AMD GPU available memory
- Question about the self-distillation dataset
- Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error
- IndexError: list index out of range HOT 1
- IndexError: list index out of range HOT 1
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