ModuleNotFoundError about alphafold

[abridgland]

Hi, thanks for reporting this. It sounds like you might need to run the second cell, named "Download AlphaFold". If you've tried that and you still get this issue then please let me know any steps I can take to reproduce the problem! In the meantime you can always restart the Colab runtime by going to Runtime > Factory reset runtime in the toolbar. Then you will be able to rerun the first two cells to set up AlphaFold from scratch. It’s only a workaround but I hope it should get things working for you again.

[rubindg]

Thank you for the suggestions. I could fix it after Factory reset runtime. After every run I have to reset factory setting and it works.

[Nisha20591]

Hi,

I have a similar error. I have tried both "Download Alphafold" which results in the error and I have tried the factory reset option. It doesn't seem to rectify the issue. Any suggestions?

Thanks,

Nisha

[Augustin-Zidek]

We had some missing __init__.py files, but this is now fixed. Are you still seeing this issue?

[Augustin-Zidek]

Could you also try the following two methods:

Method 1

1. Run the "Install third-party software" cell.
2. Restart Runtime.
3. Then run your import statement cell.

Method 2
If Method 1 doesn't help, then try rerunning the "Install third-party software" but change the line

%shell pip install py3dmol

to

%shell pip install -e py3dmol 

See also more tips in https://stackoverflow.com/questions/57838013/modulenotfounderror-after-successful-pip-install-in-google-colaboratory.

[Augustin-Zidek]

Closing this issue now as this seems to be a transient Colab problem, see also the discussion in #47. Feel free to re-open if my workaround above doesn't work.