graeme-smith Goto Github PK

16s_seq_aligner

A shiny project that allows users to explore data held in 16S databases

advcinbio_gatk4_pipeline

Markdown document describing using Docker containers with GATK4 for variant calling

bioinformagic_messages

cidr_16s_project

CIDR 16S project to identify infectious bacteria by 16S sequences

coverage_uniformity_report

DNA Nexus App to calculate uniformity of coverage across multiple samples

coverageuniformityreport

Coverage Uniformity Report from Sambamba output

demo-magic

A handy shell script that enables you to write repeatable demos in a bash environment.

dna_nexus_quick_start

Quick Start Guide to using DNA Nexus

dx-reports

Generate reports on DNA Nexus data using the dx toolkit

dxcompiler

flask-project-template

DO NOT FORK, CLICK "Use this template" - A github template to start a Flask Project - this uses github actions to generate your project based on the template.

hansel

A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence

linuxinstallplaybook

Ansible playbook for reinstalling software on to Linux Mint PC

moka-fe

moka2

Django based variant database

nhs-agenda-for-change

Simple Python + Flask web application for comparing salary to NHS Agenda for Change baseline

panelnet

Shiny app to perform biological network analysis on GEL PanelApp panels

parkrunner

R package to analyse Parkrun data

porechop

adapter trimmer for Oxford Nanopore reads

pytest_tutorial

Simple pytest_tutorial

readinglisttracker

Repo to record Continuing Professional Development

shiny-examples

test12345

test12345

test222

test222

ucl_software_carpentry

Materials for the UCL software carpentry

ultrasoundqc

Image recognition and analysis package to aid the QC of reverb patterns from curvilinear ultrasound probes

uom_lrg_parser

A LRG parser by Graeme Smith and Callum Rakhit

vardictjava

VarDict Java port