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Gray Lab's Projects

alphared icon alphared

AlphaFold-initiated replica exchange protein docking

capsif icon capsif

CArbohydrate-Protein Site IdentiFier

dotfiles icon dotfiles

A collection of dotfiles for syncing multiple computers

flab icon flab

Fitness landscapes for antibodies

geodock icon geodock

Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

graylab_config icon graylab_config

This repository serves as a storage space for lab-wide resources, such as shell aliases, useful scripts, etc. Please include a descriptive comment for everything you add to this repository.

igfold icon igfold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

iglm icon iglm

Generative Language Modeling for Antibody Design

implicit-membrane-energy-function-benchmark icon implicit-membrane-energy-function-benchmark

This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.

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