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aker--beetgenomeenvironmentassociation

Codes i wrote for the scientific paper "Predicting genotype environmental range from genome–environment associations"

algorithmics_bases

A collection of basic algorithm problems, their solutions and their associated source codes.

anvage

ANnotation Variants GEnome is a toolkit software to perform routine operations that involve VCF, GFF3 and FASTA genome files

bioconda-recipes

Conda recipes for the bioconda channel.

bioinfo_singularity_recipes

A collection of singularity recipies for bioinformatic pipelines.

blog

My personal static website generated by zola, deployed to github-pages

clean-fastq

A workflow designed to clean fastq files for the SEACONNECT project

cyberdefense

le challenge 2020 de la défense

demort

DEmultiplexing MOnitoring Report Tool. DEMORT evaluates demultiplexed fastq files by computing various metrics.

diabetesgenetics--coat

COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.

dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

ffq

A tool designed to provide preprocessing for FASTQ files. This tool is developed in C++

fromdnatomusic

Convert a DNA sequences into a MIDI track

geogendivrdata

data related to the geogendivr package

global_fish_genetic_diversity

Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020

ipython-notebook-examples

iPython notebook examples for Treasure Data

lesdonneesanimees

Scripts to animate data from INSEE

machine_learning_demo

Demonstration of my data science skills

notebook_geogendiv

A jupyter notebook work using R-package geogendiv

reprohackathon

Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow

reservebenefit--snpsdata_analysis

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

rgeogendiv

rna-seq_mapping_workflow

Pipeline for RNAseq data analysis based on reference genome

seaconnect--ddocent

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

situationpool--westernia

A prototype developed in 2016 of a strategy game in which the user is playing the President of a western country by accepting or rejecting suggestions from advisors.

smk_stacks_workflow

RADseq workflow built around STACKS v2 full-parallelized and automated using SNAKEMAKE

speckyman

A platform game developed in JavaScript

spydertrain

testing spyder on windows

vcfsynonymous

read VCF and select synonymous or non-synonymous coding variants

webappbase