Gabriel Renaud's Projects
the subprogram in schmutzi but rewritten using htslib
C++ API & command-line toolkit for working with BAM data
This program reads a BAM and produces another with a length filter applied on reads
Genome-wide scan for balancing selection using beta statistic
Fix the capitalization problems for bibtex.
Conda recipes for the bioconda channel.
A fast and sensitive gapped read aligner
Maximum likelihood demultiplexing
Joint estimate of demography and contamination for nuclear ancient DNA
transform the distance output from glactools into a neighbor joining tree
quick benchmarking to check the best way to transform DNA letters to integers
This program an EPO alignment index and fasta index for the genome and produces a tab delimited output
Little programs to handle fasta files
An efficient basecaller for Illumina sequencers with calibrated quality scores
gargammel is an ancient DNA simulator
command-line tools for the management of genotype likelihoods and allele counts
Graph-aware Retrieval of Selective Sweeps
Simple C++ program built using samtools to get the insert size from BAM files
Website for the International Society for Biomolecular Archaeology
Bayesian reconstruction of ancient DNA fragments
Library of various programs based on bamtools
A C++ class of useful little functions