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ariba

Antimicrobial Resistance Identification By Assembly

binarysearchtree-vs-mergesortsearch

Compares the time efficiency of a Binary Search Tree then Search and a Merge Sort then Binary Search.

datasharing

The Leek group guide to data sharing

djangoproject

findhomologousgenes

Parses a BLAST file for homologous genes of interest which are reported in a tab delimited format.

hiddenmarkovmodel

Class simulates a Hidden Markov Model, which is a Markov process with hidden states. Used for sequence analysis.

lyve-set

LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations

mybookproject

Project written for CMSC 256.

nbs-datademo

High level demo of how to access variant interpretation information from various public databases.

parsecontiggbkfile

Parses through a Contig GenBank file (.gbk) and returns a tab delimited file with all the gene information

ramstringproject

Project written in java for CMSC 256

referenceselection

river

Run Lyve-Set and visualize resulting cluster tree.

sorted-search-methods-comparison

Implements and compares a binary and sequential search based on their time of execution. Important: Assumes data set is sorted for unsorted see Unsorted-Search-Method-Comparison.

ticketsystemsimulation

Implementation of a Ticket Purchasing System

unsorted-search-comparison-with-mergesort

Performs a merge sort on a set of data and then proceeds to compare the search times of a binary and sequential sort

websitestresstesting

Processes parameters from an external parameter file and runs a series of stress tests on a target website using Joedog's Seige software.