griffincalme Goto Github PK
Name: Griffin Calme
Type: User
Location: Wayne State University
Griffin Calme's Projects
aminoacidcombinations
Generates all possible sequences of amino acids and saves to a FASTA file. You can edit the min and max length to tell the program what length of sequences is desired.
aminoacidsequenceassembly
Sequence assembler for amino acid subsequences. Takes a line-separated text file and returns the assembled/merged peptides (using Needleman-Wunsch global alignment) as a text file.
atp-binding_lysine_yue_qi
Source code used in Yue Qi's dissertation
dino_eat_squirrel
Fork of squirrel eat squirrel from "Making Games with Python & Pygame"
experimentalscripts
Some things I've written to solve little problems or out of curiosity
get-missing-maxquant-cells
Parses out the "Protein names" and "Gene names" from "Fasta headers" and fills in the blank cells
lineweaverburkkinematics
Calculate Vmax and Km from substrate concentration and reaction velocity
maxquant_scripts
Various scripts I've written for munging MaxQuant output data
microdeconvolution
Color deconvolution and stain segmentation for immunohistochemical (IHC) tumor sections
novel_phosphosite_search_dbpaf_psp
A couple of scripts intended to search against phosphosite plus and dbPAF to check if identified phosphosites have already been catalogued
phosphositeorthology
Generates a database of orthologous protein phosphosites from pairwise orthologous genes of the 6 species contained in dbPAF & Humans.
pythongames
Fork of Raspbian Python Games -- with a few mods
renamefilesas-folder_file
Takes a directory of subfolders and renames the files in the subfolders as 'subfolder_filename' then moves the files up & out of the subfolder before deleting the subfolder
rpi_climate_server
Web app for temperature and humidity monitoring with raspberry pi, now with a better graph!!! Forked from: https://github.com/hawkerpl/damn_hot_pie
some_uniprot_scripts
Convert UniProt fasta to excel
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