Data format enhancement about bioinfscripts

[gringer]

Can you explain a bit more about why that would be useful? I'm not sure how that would improve on what's already available using h5ls. Most of the stuff that is relevant for data analysis (e.g. raw sequence length, template/complement fastq length) will eventually be going into the telemetry function:

$ h5ls -r COLLES_L160691_20160605_FNFAD11809_MN17534_sequencing_run_Zika_Library2_12plex_72015_ch388_read406_strand.fast5 | perl -pe 's/\s+Group$//'
/
/Analyses
/Analyses/Barcoding_000
/Analyses/Barcoding_000/Barcoding
/Analyses/Barcoding_000/Barcoding/Aligns Dataset {756}
/Analyses/Barcoding_000/Barcoding/Fastq Dataset {SCALAR}
/Analyses/Barcoding_000/Configuration
/Analyses/Barcoding_000/Configuration/aggregator
/Analyses/Barcoding_000/Configuration/barcoding
/Analyses/Barcoding_000/Configuration/basecall_1d
/Analyses/Barcoding_000/Configuration/basecall_2d
/Analyses/Barcoding_000/Configuration/calibration_strand
/Analyses/Barcoding_000/Configuration/components
/Analyses/Barcoding_000/Configuration/general
/Analyses/Barcoding_000/Configuration/hairpin_align
/Analyses/Barcoding_000/Configuration/post_processing.3000Hz
/Analyses/Barcoding_000/Configuration/split_hairpin
/Analyses/Barcoding_000/Log Dataset {SCALAR}
/Analyses/Barcoding_000/Summary
/Analyses/Barcoding_000/Summary/barcoding
/Analyses/Basecall_1D_000
/Analyses/Basecall_1D_000/BaseCalled_complement
/Analyses/Basecall_1D_000/BaseCalled_complement/Events Dataset {602}
/Analyses/Basecall_1D_000/BaseCalled_complement/Fastq Dataset {SCALAR}
/Analyses/Basecall_1D_000/BaseCalled_template
/Analyses/Basecall_1D_000/BaseCalled_template/Events Dataset {805}
/Analyses/Basecall_1D_000/BaseCalled_template/Fastq Dataset {SCALAR}
/Analyses/Basecall_1D_000/Configuration
/Analyses/Basecall_1D_000/Configuration/aggregator
/Analyses/Basecall_1D_000/Configuration/basecall_1d
/Analyses/Basecall_1D_000/Configuration/basecall_2d
/Analyses/Basecall_1D_000/Configuration/calibration_strand
/Analyses/Basecall_1D_000/Configuration/components
/Analyses/Basecall_1D_000/Configuration/event_detection
/Analyses/Basecall_1D_000/Configuration/general
/Analyses/Basecall_1D_000/Configuration/hairpin_align
/Analyses/Basecall_1D_000/Configuration/post_processing
/Analyses/Basecall_1D_000/Configuration/post_processing.4000Hz
/Analyses/Basecall_1D_000/Configuration/split_hairpin
/Analyses/Basecall_1D_000/Log Dataset {SCALAR}
/Analyses/Basecall_1D_000/Summary
/Analyses/Basecall_1D_000/Summary/basecall_1d_complement
/Analyses/Basecall_1D_000/Summary/basecall_1d_template
/Analyses/Basecall_2D_000
/Analyses/Basecall_2D_000/BaseCalled_2D
/Analyses/Basecall_2D_000/BaseCalled_2D/Alignment Dataset {939}
/Analyses/Basecall_2D_000/BaseCalled_2D/Fastq Dataset {SCALAR}
/Analyses/Basecall_2D_000/Configuration
/Analyses/Basecall_2D_000/Configuration/aggregator
/Analyses/Basecall_2D_000/Configuration/basecall_1d
/Analyses/Basecall_2D_000/Configuration/basecall_2d
/Analyses/Basecall_2D_000/Configuration/calibration_strand
/Analyses/Basecall_2D_000/Configuration/components
/Analyses/Basecall_2D_000/Configuration/event_detection
/Analyses/Basecall_2D_000/Configuration/general
/Analyses/Basecall_2D_000/Configuration/hairpin_align
/Analyses/Basecall_2D_000/Configuration/post_processing
/Analyses/Basecall_2D_000/Configuration/post_processing.4000Hz
/Analyses/Basecall_2D_000/Configuration/split_hairpin
/Analyses/Basecall_2D_000/HairpinAlign
/Analyses/Basecall_2D_000/HairpinAlign/Alignment Dataset {662}
/Analyses/Basecall_2D_000/Log Dataset {SCALAR}
/Analyses/Basecall_2D_000/Summary
/Analyses/Basecall_2D_000/Summary/basecall_2d
/Analyses/Basecall_2D_000/Summary/hairpin_align
/Analyses/Basecall_2D_000/Summary/post_process_complement
/Analyses/Basecall_2D_000/Summary/post_process_template
/Analyses/Calibration_Strand_000
/Analyses/Calibration_Strand_000/Configuration
/Analyses/Calibration_Strand_000/Configuration/aggregator
/Analyses/Calibration_Strand_000/Configuration/basecall_1d
/Analyses/Calibration_Strand_000/Configuration/basecall_2d
/Analyses/Calibration_Strand_000/Configuration/calibration_strand
/Analyses/Calibration_Strand_000/Configuration/components
/Analyses/Calibration_Strand_000/Configuration/general
/Analyses/Calibration_Strand_000/Configuration/genome_mapping
/Analyses/Calibration_Strand_000/Configuration/hairpin_align
/Analyses/Calibration_Strand_000/Configuration/post_processing.3000Hz
/Analyses/Calibration_Strand_000/Configuration/split_hairpin
/Analyses/Calibration_Strand_000/Log Dataset {SCALAR}
/Analyses/Calibration_Strand_000/Summary
/Analyses/EventDetection_000
/Analyses/EventDetection_000/Configuration
/Analyses/EventDetection_000/Configuration/aggregator
/Analyses/EventDetection_000/Configuration/basecall_1d
/Analyses/EventDetection_000/Configuration/basecall_2d
/Analyses/EventDetection_000/Configuration/calibration_strand
/Analyses/EventDetection_000/Configuration/components
/Analyses/EventDetection_000/Configuration/event_detection
/Analyses/EventDetection_000/Configuration/general
/Analyses/EventDetection_000/Configuration/hairpin_align
/Analyses/EventDetection_000/Configuration/post_processing
/Analyses/EventDetection_000/Configuration/post_processing.4000Hz
/Analyses/EventDetection_000/Configuration/split_hairpin
/Analyses/EventDetection_000/Log Dataset {SCALAR}
/Analyses/EventDetection_000/Reads
/Analyses/EventDetection_000/Reads/Read_406
/Analyses/EventDetection_000/Reads/Read_406/Events Dataset {1461}
/Analyses/EventDetection_000/Summary
/Analyses/EventDetection_000/Summary/event_detection
/Analyses/Hairpin_Split_000
/Analyses/Hairpin_Split_000/Configuration
/Analyses/Hairpin_Split_000/Configuration/aggregator
/Analyses/Hairpin_Split_000/Configuration/basecall_1d
/Analyses/Hairpin_Split_000/Configuration/basecall_2d
/Analyses/Hairpin_Split_000/Configuration/calibration_strand
/Analyses/Hairpin_Split_000/Configuration/components
/Analyses/Hairpin_Split_000/Configuration/event_detection
/Analyses/Hairpin_Split_000/Configuration/general
/Analyses/Hairpin_Split_000/Configuration/hairpin_align
/Analyses/Hairpin_Split_000/Configuration/post_processing
/Analyses/Hairpin_Split_000/Configuration/post_processing.4000Hz
/Analyses/Hairpin_Split_000/Configuration/split_hairpin
/Analyses/Hairpin_Split_000/Log Dataset {SCALAR}
/Analyses/Hairpin_Split_000/Summary
/Analyses/Hairpin_Split_000/Summary/split_hairpin
/Raw
/Raw/Reads
/Raw/Reads/Read_406
/Raw/Reads/Read_406/Signal Dataset {20403/Inf}
/UniqueGlobalKey
/UniqueGlobalKey/channel_id
/UniqueGlobalKey/context_tags
/UniqueGlobalKey/tracking_id